mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CCTCCGACCCAAAATAAGTGT ACTAATTTTGGATTGGAGGGA GATGGATATAATTTAGTACTCCCTCCGACCCAAAATAAGTGTCGCGGTTTTGAACTACACTAATTTTGGATTGGAGGGATAGAAATTAAGAAAGAAG GTGCACCAGCCGCTCCACTGTGGCCACGTGGACGACCTCGGCGGCAACACCATCAAACTCCGCTGGTACAGAAGGAAGAGCAACCTGCACCACGTGTGGGATTCTGACGTGATCACACAGGCCATGAAGGACTTCTTCAACAGGGACCAGGACACCATGATCGAGGCCATCCAGCGCAACATCACCCAGGACTGGTCCAGCGAGGAGAAGCAGTGGGAGGCGTGCGGCGGCAAAACCAAGATCACCTGCGCCGAAAAGTGAGCTCCCAGATCACGATGACGACGAGCCTGCCAATCCAACCGCAAAACTGAACATGTATACCCCGAGGCTGGATCTGACGGCTGAGAATGATCGAATGCAGGTACGCCAAGGAGAGCGCATTGCTGGCCTGCGACGCGTACGAGGGCGTCGAGCAAGGCGACACCTTAGGAGACGACTATTACTTCCGGGCGCTGCCGGTTGTCGAGAAGAGGATCGCTCAGGGGGGCGTGAGGCTGGCGGTGATCCTTAACCAGATCTTCAGCGGGACGAACAGCAGGCTCCAGAGCATCTGATGGATATAATTTAGTACTCCCTCCGACCCAAAATAAGTGTCGCGGTTTTGAACTACACTAATTTTGGATTGGAGGGATAGAAATTAAGAAAGAAGTAGTAGAAGAAGAAGATTATCTTGTCTGACCAAAATCACGAATTCGCGATTAAATTTGTTATAAGTCCACCAAAGCGGCTTNNNCTCGCTGCTGCAGCAAATCACTGTATGTGTGTGTATGTATGTAT 2 0 5' arm Pseudoroegneria_spicata mirnest MIR1122 0.000001 bdi-MIR5180b 0.00000002 -31.4 ........((((((.....(((((((((.(((((((.(((((...((((...))))))))).))))))).)))))))))...))))))......... (-31.4)