mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TATTTTTTTACAGAGGGAGTA CTCCCTCTGTAAAGAAATATA TAAAACGTACTACTCCCTCTGTAAAGAAATATAAGTGTTTAGATCACTACTTTAGTGATCTAAACGCTTTTATATTTTTTTACAGAGGGAGTATCAACTATA GCATTTNNNTTTTTTTTTTTTGAAGACATGAGCCATGCATGAAATCTTATCGTGGAGAGCATTTCAGTACACGTAGATGGTTTCATCCTGATAGGAACTAGGCTCCATGTTCCTATGTAGATAAGCTTGTAATGTGGACAGATATCACCACGCATCGTGACTACAGTAAAACGTACTACTCCCTCTGTAAAGAAATATAAGTGTTTAGATCACTACTTTAGTGATCTAAACGCTTTTATATTTTTTTACAGAGGGAGTATCAACTATACTTCATCTATCCTTGTCTACGTACAGTACTGTCAATCACTGGTCTTCGGCAAGTACAGAAGAGGAATTTGGGGGGGGGGGGGG 1 0 3' arm Pseudoroegneria_spicata mirnest MIR1122 2e-18 tae-MIR1121 0.000000000001 -50.3 ..........(((((((((((((((((((((((((((((((((((((((...))))))))))))))))..)))))))))))))))))))))))......... (-50.3)