mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure AGGCAAGTCATCCTTGGCTAC AGCCAAGGAGACTGCCTGT AGCCACTCGGGCTAGCCAAGGAGACTGCCTGTGCGCAGTGGGAGACCGGTCCAGAGAGAGAGATCACATTCATGGCCACAGGCAAGTCATCCTTGGCTACCAGAAGAAGC GCATTTTNNNNTTTTTTTTTTTTTTGATCGTCAGACCTGGTCGACCGTTCTAGCCGGTTTCCCAATTTAATAACAAATACGGAGTACATACTAGGAAGAAAAAGGATTATGTCAGTTGCACATATTCTCGCCCATGAATCGTGGTTCAGCGAGTCATCTGCTGATCCTAAGCATGTCGTCTCTCACTGAACAGAGTGACGGATCCAAGCAGAGCAATCTGTTCGCCCTCTGTACTCGAAGTGCCGATGCAGGGAGTGATGAACCGATGACGATTCGCCATGCCCAACGTGGAAAGCTTCCCTTGATCGAACGGCTCCTGCTGCATGCGAAAAATTACAGATCAGATAGGGTTAATCAAAGAAGAGAAGAGACAGGGAAGAAGTCCGGTTGAACTGAAGTAGTTGGCGTCAGGGAGTTAGTCAAGACTTGAGAAGAGATGAGAGGCTGGCATGAAGGGTAAGAGCCACTCGGGCTAGCCAAGGAGACTGCCTGTGCGCAGTGGGAGACCGGTCCAGAGAGAGAGATCACATTCATGGCCACAGGCAAGTCATCCTTGGCTACCAGAAGAAGCCATTACCACCATGCAAGGCCCCTCCCTCCTACTACTCTCTGCATCTCTCTCTCTCTCTCTCTCTCCCCCCCTCCCCTCCTCC 2 2 3' arm Pseudoroegneria_spicata mirnest MIR169_5 0.000000002 zma-MIR169k 0.00000000009 -42.6 ((((.....))))((((((((((((((((((((.((..((((.......))))(((.((....))...)))...))))))))).)))).)))))))))............ (-42.6)