mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GCTGGGACGGAGGGAGTACAT CCTACTCACTCCGTCCCATGAT CCCTTTACAACCTACTCACTCCGTCCCATGATGTAAGACGTTTTTGCAAGCTGGGACGGAGGGAGTACATGGCAAAG ACCGATTTTTNNNTTTTTTTTTTACTCAAAGCTGGATGTACTATTGTCAGTATACTATATACATGTAACATGTCCCTATCGAAGGGCCTACACTAAGATCACAAAGGTGGTGAGCTCCACAGTGCAAAAAAAAAAAAAACCTACCCTTTACAACCTACTCACTCCGTCCCATGATGTAAGACGTTTTTGCAAGCTGGGACGGAGGGAGTACATGGCAAAGCTTGTGGCAAAAGTCAAGCTATATGGGTCACCTTAAGCTTGGGCTGCCCACAAGGCATAAAAGCAGTATTCTCTCTTCTCTACATCAACAAATAACGTGGCGTACCTTACTGTAAAATGTGATCTTATAGACTCTGTATTTCTCCAAGCTATGTAGATCCCAACTCCCAAGGTTATACACTAAGGATGCCCTGCAGATGTGGTTTGCGACGACGACGACATAGTTGGGTTGTCCGAGTCCGAGTTAACGCCGCTCCTCGGGCCTTCCGACTGCCTACTCGACTGCTTTTCTAAGTGTGGCTTCAACCCTGATGGCAACGTCACCGTCGGAGCGTATACTTGGTTCGCGCTTCCCGACGCAACATTGGTTGCATCTGCTGCTGCCGCGGCGGCGGCTGCAGCGGCATACTCCTGCTGGGGAACCCANNTGCAGCTGCCCACCA 5 0 3' arm Pseudoroegneria_spicata mirnest MIR1122 0.000004 tae-MIR1130 0.0000000009 -27.3 ............(((((.((((((((((...(((((((...)))))))...)))))))))).))))).......... (-27.3)