mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TCATCCTGATCATCATCTTCA AAGGTGTAGGTTTGGCTGGGC CATGTCCTGATGAAGGTGTAGGTTTGGCTGGGCTGTTATCAACAGGTTCATCTTTCGGTTGATCCGTCTGCTTTGGAGCAAGCACTGGAGATGACTCATCATCCTGATCATCATCTTCATCATCATCA GCATTTTTTTTTTTTTTTTTTGACAACATAGCACCTATCGTTATTTGATTTCTAGAAGCAAGCTGCAGTAGAAGTTCGGCATACACTTGTCAAAAGACCAAATTCGTCTAATATAATACAAAACTAGTATCCCCAGAAAGACACAAGAGGAAACTTCGCAATGAAGGAAATCGCCACTTTTGAGCTCATCATTTCTTATCCTCTCTAAGGACGACATAGTTGTGGCCATTAGTCTTCTGTATCTTCGAAATTTTCTTCAGAATTTCAGCGAAGGCATTCTTGTCCTCTGGACCTCGTAGTCTAGACTTAAATCTGGACACTAAATCTTGTGTGGTGACAGGAGCCACTGCAAGAAGAACAGTCCTGATCTCATCCTCTGTCACAGGAGATACATTGGCACTTTTCGATGAAGCAGAGGCCTTTGGTGTAGGTTTTGATGAAGATGGTGTCTCGTCTTTGATACTTGATGTTTTTGTATCCTTTGCTTTCTTTGAAGCTGCACCGCTAGATGCTTTGGCATCATCACCACCTGATTTCCTCTTTTGCTTGGATTTCGATGCAGGAGGTGTACTACGAGCATGTCCTGATGAAGGTGTAGGTTTGGCTGGGCTGTTATCAACAGGTTCATCTTTCGGTTGATCCGTCTGCTTTGGAGCAAGCACTGGAGATGACTCATCATCCTGATCATCATCTTCATCATCATCATCGGCATCCGACTCATTTTGTCCAGAAGAACGACCAAGTAGCTTCTTTAATTCCTTTCCTGACTTGCTCAGGCCACCTTCTTCTTCATTCTCTTCATCATC 4 0 3' arm Pseudoroegneria_spicata mirnest 100 100 -37.8 .(((...(((((((((((..((((.((.(((...((((((..((((((..(((...(((.((....)).)))..)))...))).)))..))))))...))).)).))))..))))))))))).))).. (-37.8)