mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TATTTCTTTACAAAGGGAGTA CTCCCTCTGTAGTGATCTA TGAAGAATTCCGACCATGCTACTACAGTTATACTCCCTCTGTAGTGATCTAAACGCTCTTATATTTCTTTACAAAGGGAGTATATTTCTGTAGTTGGAGGAGGGAGGACTT CCGTNCCNNGCGACCGCCACCTGTGTACCCCCATGCCAACCACGGCCGCCGCACGATCCTTCTCATCGCCAGCACCGCCTCCTCTCCTCCACGCGGGATCACGGACCGCGGTCGCCTCCTTCCCGCGTGGACCGCCTCCTACCGTCGCCCTCTCCCTCTCGGTCTCCGCCTCCGCCCCCACCTCGCCGTGGGCGCCGGCGGCCAACCCCAAGTACCACAACGCGAAGGTGGATGCGGGAGACGAGGACGTGGACGGGGGCGATCTGCTGCGGCAGTTCACGCGGGAGGTGGCGCGCGCCGGTGTCATGCACGAGGTCAGGCGACGGCGGTGGCACGAGGACGCGCGGGACAAGCGCAAGCGAAAGTCCCGCGACGCCGCATGGAGGCTCCGCCGGAGGCGTTTCAAGGGTCCATATCCATTTGACGATGAGCAGGAGCCGAAGGAGGGAACCACAGACGATGATGGGTGTGACAACTGGGAGCTTCCTGGAGGAGAGTTTCCTTCTTTCAGATGAACCAAGAAGCTACATTTCTCGATGTTTTGTCTGATGAAGAATTCCGACCATGCTACTACAGTTATACTCCCTCTGTAGTGATCTAAACGCTCTTATATTTCTTTACAAAGGGAGTATATTTCTGTAGTTGGAGGAGGGAGGACTTGGCTAGGTAGGGTGAATTTCATGCATCTTCAGGATCGAAAGCTCTGTTATGCATGTTATGTACCTACTATATCTGAAAGCTCTGAGTGTGAATGTGTGATCTCTCTGGTGTGTAATTCGGATAGAATTGCCAGTTTGCTGCAATGGCTCAACGCCATGTGTCTTCCATTGGAATAGAATTGATGATTTGCTGTTGCAAAGACTTTATCTAGTAATCTTTTCATCCAAAAAAAAAAANNNAAAATGC 3 2 3' arm Pseudoroegneria_spicata mirnest MIR1122 0.0000000000004 tae-MIR1121 0.000000000001 -35.9 ..(((..((((..((...(((((((((.((((((((((.(((((.(((.(((......))).)))...))))).))))))))))...)))))).))).))..))))..))) (-35.9)