mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GGCGCCGACGACGACGGTGGT GCTCTCGATGTCGGTGGCCAA TTCCGGCTATCTTTTTCTTCAAGCTCTCGATGTCGGTGGCCAACTCTTTCCTACTTTCCTTGAAGAGGAGGTAGCGGTACACGAACCACCCGGTGTACCCGAGCCCAACCAGCTCCAGGAGCTTGGGGAGCAACGGCACGGAGTTGATGGCGCCGACGACGACGGTGGTGAGCCAGAGAGCCACGACG ACGCATTTTTTTTTTTTTTTTTTCCTCTACAATACAATACNNNNTTTCATTTTATTCATATAAAGTCAATTCGACGATCACATTTTCCATATGAACACATTGATATAGAAACAATAGAAGACTTCCAGAAACTGATACAATTTCACTATTGTCACCGCACACCAACCAAAGCATATTTCTTGTTTCATACAGATATGTATGTAACACACAAATGCAGTGGATGGTACTCTAAGCAAGTAGGTGTTCTTCCATTACATTGACAGAAAAAAGAGCCATCAAGAACGTTCCGGAGAACTTGCATTTATTCTGTTCCGGCTATCTTTTTCTTCAAGCTCTCGATGTCGGTGGCCAACTCTTTCCTACTTTCCTTGAAGAGGAGGTAGCGGTACACGAACCACCCGGTGTACCCGAGCCCAACCAGCTCCAGGAGCTTGGGGAGCAACGGCACGGAGTTGATGGCGCCGACGACGACGGTGGTGAGCCAGAGAGCCACGACGGCGCCGCCGCTGTAGAGGAGGAAGGTGGGCTTGTCCTCAATCGCCTCCCACTTCCCTTTGAGGTCCTCGATGATCTCGTCGCCGCTCGCCGACGTGTCGTCGGAGGCGGCCTTCACGCGGAGCAGGGACGGCCTCGGCGCATCTTGGAGGCGGAGCGGGTGGAGGTTGCGCCGCGGGAGGAGGGCGGNNGNNCGGGGGGCGGCGTTGCCGGTGGCGGCGGGGNNNCGCGCCCCGCNGNNNNNNGCCACGGNNTACGCCGTGGCAGCCATTGATCTGTCAGTGCCTTATCGCTAGAGCTATCGCTTCCTCGGCCTCTCGCTCTGCGC 4 1 3' arm Pseudoroegneria_spicata mirnest 100 100 -63.1 ....((((.(((.....((((.(((.(((.((((((((.((((((((...((((((.((((...)))))))))).(((......)))..(((.(((.(((((((((...........)).)))))))..))).)))...)))))...))))))))))).))).)))..))))..))).))))...... (-63.1)