mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TCAATAGATTGGACTACATAC ATGTAGTCCAATGGATTGAAC ACATCTTGATCAAAAGTAATATATGTAGTCCAATGGATTGAACTACTCAACCACATCATCGCACTAAAGATGGTGTGCTAGTACTTCAATAGATTGGACTACATACATTACACTTGACCAAGACA GTCTACGCAGGAGGAGGGTGCAGCACGATGTTCATAGCTAAGAACCAAAATGAATCCTGTCTCTGTCCCTCATTATTTCCCTTACCTAGTTTACATCTTGATCAAAAGTAATATATGTAGTCCAATGGATTGAACTACTCAACCACATCATCGCACTAAAGATGGTGTGCTAGTACTTCAATAGATTGGACTACATACATTACACTTGACCAAGACATTTCTCCAACGGACAAAAAAAAAACAACACAAAACCAACTATTCATCCAGAGATTCTCAATAGGTTTCTTCTTAGATAAGATGGTTGCGGAATGCATGGAACATCTTTGGAGAGAGAAGCAGTAGGAAGGCTAGAACCGAGCCGAAGAACATCTTCATTATGTAACCGAAAGCGTCTGATGACTCGCTATCTTCTGAGACACCCGCACTTGGGTTCACCATAGCTTCTGCTGAAGGAAGCGACTCTATCACTGCATCAGCCAGGTCTGTGATGAAGGATGGCGTCAGACCTAGGGCCGGAACACGCCCCCAGTTCTCTATCCCTGACTCCAAAGCTAGCTCCCTGTACTCCATGTCTATCTCTTCAAGCGTCTCAATGTGCTCACTCACAAAACTGACTGGAACGGCTAGTAGACTCTTGACACCATTCTTACCAAGGTCGACAAGAACCTCATCAGTGTATGGCTTCAGCCATTGAACANGCCCAACACGACTCTGGTACGCCAATATATGGTTGGT 3 0 3' arm Brassica_napus mirnest 100 aly-MIR860 0.00000000000003 -48.6 ...(((((.((((..(((((.(((((((((((((..((((((.((((....(((((((((........)))))))))..)))).))))))..))))))))))))).)))))..)))).))))).. (-48.6)