mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure ACAAGCTGCCAGCCTGATCTT GCTCGGGCACGCAGCTCTGGAT TGTCAACAAATACAAGCTGCCAGCCTGATCTTGGGTCCTCCAACTGGCCTTCTAGACCAAAACATACGGTCAAGCTCGGGCACGCAGCTCTGGAT CATTTGAATTTCAAGAACATAACATTATTCATCCTTGCAACAAAAGATCAAACGAGAGTATAAATAGAGATACAAGGCAATAATTTTCAAAGACGGTTCTAGAACAATGCAGCAACTTATCAACTTCAATCAGAAAATGATGTTAAATGCAACTTCATCATTTACATATCCTGGAAGAACATATTATGGGGCATACCTAAGAGTTTTGAATTGAAGTACATCTCATTTTCGGATCCCCTTTAAAGACAAAACACAACTGTTGATATAGTACAATTGAACTATAATCAGTACTCTAGTGATCCAGTCGATGGGAGAACTGAATTAATGTTGCGAGTAGAATTTCTAGCTACACAGTCCTCTGGACTACTGCTTGTCTACTGCTGTGTAGGAATGGAACTCCACAACTCCATATCATCCTGACTCATCTGCGGGACTTCTGGAGGAGACAGTATCTTAATAAACCGAACATTATTGACAAACTCCTCCCAAGGATCATCCCCAAGAAGAAGAACATCCTTCTCCTTGTCAACAAATACAAGCTGCCAGCCTGATCTTGGGTCCTCCAACTGGCCTTCTAGACCAAAACATACGGTCAAGCTCGGGCACGCAGCTCTGGAT 5 1 5' arm Pseudotsuga_menziesii_var._menziesii mirnest 100 100 -26.9 ............((((((((..((((((.((.(((((........)))))....((((.........)))).)).))))))..)))))).))... (-26.9)