mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TCTCTTCCTCTTCCTCATCTT GAAGAAGAAGAAGAAGAAGAAG CATCCTCCTCCTCCTCTTTCTTCTCTTCCTCTTCCTCATCTTCTTCCGGAGGATCATATGGCAATGGAGGTGGTAATGGTGTTTTCATAGGGCTAAACTGGGGGAATATATCAGGTCTACGCCCTGGTTTTGGCCTCTCCCACTCGATGGGGAAATCGAGAGGATTACGGCGCGTGAGTTTCTCTTCATCGGGAGCCATACGGACCACTTGCCTCTTTGCCCTCAAAAGATGAGTTGAAACCACGCGCTGAGAATCGAACATTGGAATTGAGCATCTGCAGCGAACGAAGCACGCGTCGCCCACAGAAGAAGAAGAAGAAGAAGAAGAAGATGGGGATGAAGTCGAAG TCTTCATAAATAAGCCTGCAAAAAGTCCCAACAAGGGTTTTGCATGATCCTTTTTGCCCAAAGTTAGAAGAAAAAAAACACTTAAGCAACATTCTAACTGGATGACCATTACATTATTATCCACTATATATAAGCACCACGTGAAGCAAGAGGTAACGTGAACTAAGAGAATAAAAACAAAATTGTGAAAAATGTCTAAGGCCCATACTTTGCCACTGAGAGAGTTCTACTGATTCTCAGGCTGATCTGGCTCTTCCTTTTCAGGATCATCCTCCTCCTCCTCTTTCTTCTCTTCCTCTTCCTCATCTTCTTCCGGAGGATCATATGGCAATGGAGGTGGTAATGGTGTTTTCATAGGGCTAAACTGGGGGAATATATCAGGTCTACGCCCTGGTTTTGGCCTCTCCCACTCGATGGGGAAATCGAGAGGATTACGGCGCGTGAGTTTCTCTTCATCGGGAGCCATACGGACCACTTGCCTCTTTGCCCTCAAAAGATGAGTTGAAACCACGCGCTGAGAATCGAACATTGGAATTGAGCATCTGCAGCGAACGAAGCACGCGTCGCCCACAGAAGAAGAAGAAGAAGAAGAAGAAGATGGGGATGAAGTCGAAGATGTGTATGATGGAGATAGAATAGCTAGGGTTTTGAAGCTCGGAATTGAGAGGCAAATCGAAGCCATCAATTTTTTCTTTTTTCCTACTCTCTCTATCGTATCGTATTTCGCCC 3 1 5' arm Quercus_petraea mirnest 100 100 -102.8 ........((.(((((..((((((((((.(((((.((.((((((..((((...(((.....(((((.((.((((.((((.....))))...))))..))((((((.((.((((((.......))))))..))...)))))).((((((......))))))..((((.(((((((((.(((((..((((((..(((...((.(((.........))).))..)))....))))))..))))))))))))))..))))...)))))....)))...))))..((((.((.......))))))....)))))).)).))))).)))).)))))).))))).))........ (-102.8)