mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GCTTCTTCATCATCATCCTCA ATGATGATGATGGGAGAAGAGG ACCCTTTTGATGATGATGATGATGGGAGAAGAGGGGCTTCTTCATCATCATCCTCATATTCTGGA GAACCTATGTTAATAACCCCAAATTTTAATACCAACCCTTTTGATGATGATGATGATGGGAGAAGAGGGGCTTCTTCATCATCATCCTCATATTCTGGATCTGCAGCAGCAAAAGACAGATACAGAAATGATTTCCATGACTCAGGAGGATTACAGAACCAGAGTGTACAGGATCTGGAGAATTATGCTGTGTACAAAGCTGAAGAGACAACAAAGACAACTAACAATTGCCTGAAGCTTGCAGAGGAAATAAGGGAGGATGCTACTAAGACCCTTGATATGTTGCATCATCAGGGTGAGCAAATCACAAGAACCCACCAGATGGCTGCTGATACGGATAAGGATCTGAGTCGGGGAGAGAAGCTTTTAAATAACCTTGGTGGCATGTTCTCTAAGACTTGGAAGCCAAAGAAGACCCGGGAGATTACAGGGCCTATAAATACAGCAGATAATTTATCCAAAAGAAGTGCAAACCACTCAGAGCAGAGGGAAAAGTTGGGTTTAGCTCATGTACCCAAAGGACGGTCAGCTTCTCGAACAACTCCTCCTGAACCAACAAACGCCTTGCAGAAAGTTGAGGTGGAGAAGGCAAAGCAAGATGATGCCCTTTCGGATCTAAGTAAT 2 1 3' arm Quercus_petraea mirnest 100 100 -24.7 ..((.....((((.(((((((((((.(((((.....)))))))))))))))).)))).....)). (-24.7)