mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GGCCGGGGGACGGACTGGGAA CCCAGTCCCGAACCCGTCGG GTCCCAGTCCCGAACCCGTCGGCTGTCGGCGGACTGCTCGAGCTGCTCCCGCGGCGAGAGCGGGTCGCCGCGTGCCGGCCGGGGGACGGACTGGGAACGACCGCTTCGGCGGTCTTCCCCGGGCGTC GTCCCAGTCCCGAACCCGTCGGCTGTCGGCGGACTGCTCGAGCTGCTCCCGCGGCGAGAGCGGGTCGCCGCGTGCCGGCCGGGGGACGGACTGGGAACGACCGCTTCGGCGGTCTTCCCCGGGCGTCGAACAGTCGACTCAGAACTGGTACGGACAAGGGGAATCCGACTGTTTAATTAAAACAAAGCATTGCGATGGTCCCTGCGGATGCTCACGCAATGTGATTTCTGCCCAGTGCTCTGAATGTCAAAGTGAAGAAATTCAACCAAGCGCGGGTAAACGGCGGGAGTAACTATGACTCTCTTAAGGTAGCCAAATGCCTCGTCATCTAATTAGTGACGCGCATGAATGGATTAACGAGATTCCCACTGTCCCTGTCTACTATCCAGCGAAACCACAGCCAAGGGAACGGGCTTGGCAGAATCAGCGGGGAAAGAAGACCCTGTTGAGCTTGACTCTAGTCCGACTAAGTCAGAATCCGGGCTAGAAGCGACGCGTGCGCCCGCCGCCCGATTGCCGACCTGCAGTAGGGGCCCTTGGGCCCCCAGAGGCACGTGTCTTTGGCCAAGCCCCCGCGGCGGACGAGCCGCGTGGGCCGCCATGAAGTATAATTCCCACCGAGCGGCGGGTAGA 5 1 3' arm Quercus_petraea mirnest 100 peu-MIR2911 2e-39 -73.6 .(((((((((....(((((((((((.((((((.((((((..(((((....)))))..)))))).)))))))).))))).))))....)))))))))..((((((....))))))............. (-73.6)