mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure AGCTGCTGCTGCTGTCGATCT ATCGCTGTCGTAGCTGCTAC GCCGTAACCGAGATCGCTGTCGTAGCTGCTACCGTAGCCGAAGCCGTTGTAGCCCGAATCGTAGCTGCTGCTGCTGTCGATCTCGTTCACGA GGGAACTTCAAGCGGGAGCATTCATGAGTTCTCTGACTGAGGACTTGTGCGCGCTCTCTGCGAGGGGCCTCCGCATCGTCGCGCTTCTACCTGCTTGCCCCGGGGTTTCAGTTTTTGCCACCAATCGAACCCCCGCCTGACGAAACGACGCCAGCGTCGCTGCCGCCGAGGCTGTCCGACGCGCCGTTCTCGATGATGCTGCCGCCTTCAATCGATCCGCCGTCGCTCGATCCGCCGTAGTTGGAACCGCCGCTGATCACGCTGCCGCCGTAGCTGGAGTCGCTGCCGCCGTAGCCGTAACCGAGATCGCTGTCGTAGCTGCTACCGTAGCCGAAGCCGTTGTAGCCCGAATCGTAGCTGCTGCTGCTGTCGATCTCGTTCACGACGGTTGTGCTCTCGTCGACGACGATCGTGGCGAAGTTCGGCCACCAGTTGTACTTGCACTGCACCAAGCACTCGGTGAGGGCA 3 1 3' arm Quercus_robur mirnest 100 100 -27.7 ..(((...(((((((((.((.(((((.(((((.((.(((((.....)))..))....)).))))).))))).)).).))))))))...))). (-27.7)