mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TCATCATCATCATCATCTTCT AAGAGATGGAGATGGAGATG CCGGTTTGTCATCATCATCATCATCATCTTCTACATATTCTTCCTCATCAGCGCAAGCAGCTCAGTCCAGTATTAATCCATTAAACAGCGGCGCACTATCACCAGCGGCTTGTTATGCAACGATAGAGAAGGCTAGGGAGTTTCCTGAAGGGAAGAAGAAACAGCAAGCTGGGGAAGTAAGTAGTGTGGAAGAGATGGAGATGGAGATGGTTCATGG TCTATTCCTTGTTTACCGCTATTCCTTATTCAGCATGGATCCATCAAACATCCCTGGCAGTAAATCATTCAAAAGAGAGATCCAAGGTCCTCGTCCTGCACCTCTCAGAGTACATAAAGATTCCCACAAGATCAAAAAACCACCACTAGCGCCGCAACATCCCTCACAACCACAAGTTCAGCTTCGCCCGCCGATCATAATCTACACGGTCTCACCAAAGATAATTCACACCAACCCTAATGACTTCATGAACCTAGTTCAACGCCTAACCGGTTTGTCATCATCATCATCATCATCTTCTACATATTCTTCCTCATCAGCGCAAGCAGCTCAGTCCAGTATTAATCCATTAAACAGCGGCGCACTATCACCAGCGGCTTGTTATGCAACGATAGAGAAGGCTAGGGAGTTTCCTGAAGGGAAGAAGAAACAGCAAGCTGGGGAAGTAAGTAGTGTGGAAGAGATGGAGATGGAGATGGTTCATGGGGTTGATAGGACGGGTTCGTTTCCGGGGATTTTGTCACCAGGGCCGGCTTCACTTCCTCCAATTCCTCCAAACTTTTTCTCTCCACCATCTGATCCTAGCCCGTTTACCTCCTTCTTGCATGATTTAAGCCCCGCGCTTCAAGCCGGTAGCAAAAATTACCAAGAAGGTAGTTTCATGCTTAGTCCTTCAAACTTCTTTTCACCTTATATGATTTCCCCAACTGCACCATCCTTTGATTTGTT 2 1 5' arm Quercus_robur mirnest 100 100 -55.5 (((.....(((((.(((((.(((((.((((((((((.((((((((((...((((..((.(((......))).((((....))))...)).)))).(((((....(((........)))...))))).(...(((......((((((...)))))).......)))...))))))))).))...))))))))))))))).))))).)))))....))) (-55.5)