mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure ACAATGGATTGGACAATGGCT CCATTCTTATGGATTTATTTGTA AAACACATCAGAGCCATTCTTATGGATTTATTTGTAGCAGGCATAGACACATCTGCAATAACAATGGATTGGACAATGGCTGAGATTGCAA GTGGGCCGGTTAGAGGACTCGCTATCCGGCTTGGCCGCCTCCGGATCCTCGGTGGATCTGACGGCGAAGCTGGCCAAGTACGTGGCCAGCTTCACCTGTCGGATGGCGTTCGGGCTGAGTTTCGTCGGGAGCGGGATGGACAACGAGAGGTTTCTCGAGATCTTCACGGAGGCGAACAGGGTGATCGGGAAGTTCGCGGCGGAGGATATTTTTCCGGTGTTTGGGTGGGTCGTTGATCGGGTCTCGGGGCTTGAGGGTAGCAGGAGGAAGAGCTTTCGAGCTCTGGACACGTTTTACCAGAAAGCTATTGAGGATCATCGAGAGAAGAAGAGGACTGGGGGAGATGAGCGTGAAGATCTTATTGACGTGTTGCTCAAGCTACAGAGTCAAGAAACCAAACTCGGGTCTACGCGGATCACTGATAAACACATCAGAGCCATTCTTATGGATTTATTTGTAGCAGGCATAGACACATCTGCAATAACAATGGATTGGACAATGGCTGAGATTGCAAGACACCCAAGGGTGATGAAGAAAGTACAAACCGAGATACGTGAGCGTGTAGGAGACAAGGGAAAAGTGACATACGAGGATCTCGAAGGCCTAGAGTACATGAAAATGGTGATCAAGGAGACTTGGAGGTTACATGCACCGAGTCCGATTCTTATTCCAAGAGAGGCAATGTCGAGATTCAAGATCAAGGGCTATGACATATACCCGGACACGGATCATGTAACACATGGGCTATGGACGTAGCCCTGATGTGTGAAGATCTGATG 4 2 3' arm Raphanus_raphanistrum mirnest 100 100 -18.5 ......(((..(((((((.((...(((((((((((.(((((..........))))).)))..)))))))).)).)))))))..)))..... (-18.5)