mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GGAAGAGGCAGTGCATGGGAA TCCATGCTCTGCTTGTTCCCT AAAGCTAGAAAAAAAAGAGAGGGAGAGAAAGAGGGGGCCAGGGAAGAGGCAGTGCATGGGAAGAGACCAAACATAGTCATTTGATGTTTTGGTAAAACTCAATCCATGCTCTGCTTGTTCCCTGTCTCTCTCTCGTTACCACTTTTGTCTTCGTTATTTTC GACGAAAGATCACAGCATATGAACAAAGCCAAAGCACTTAAAGTACTCTGCGCAAAGCTCTATGAGATTGAGGTTGAGATTACAGAGCAGCCGTTCAAAGCTACGGTCAGAACAGATTGGCAGTGGAGACCGATCCGGACGCATCCGTACATACAATTTTCCACAAGGGAGAGTCACGGATCATCGTGTGGGAATCACTCACCACGCTATTGAAGATATGATGGAAGGAGAGAATTTGGACACCTTCATCGACGCACTTCTCTTACGCCAAGAGATGGACGCCATTGCTTCTTTCAGCTCCACTTCATGAATACAGAGTTAGACCTAAATCAAGAACACTTAGCTTGTCAAAAGGGTGTTAGCCATAGTAAAATAAAATATAAATTCATTCAAAGCTAGAAAAAAAAGAGAGGGAGAGAAAGAGGGGGCCAGGGAAGAGGCAGTGCATGGGAAGAGACCAAACATAGTCATTTGATGTTTTGGTAAAACTCAATCCATGCTCTGCTTGTTCCCTGTCTCTCTCTCGTTACCACTTTTGTCTTCGTTATTTTCATTGCAAGACATA 4 0 5' arm Raphanus_raphanistrum mirnest MIR408 5.0E-32 ath-MIR408 3.0E-36 -57.8 ..(((.(((.....(((((.((...((..((((((((.(((((((.((((((.(((((((..(((((((((....(((....)))..))))))....)))..))))))).)))))).))))))).))))))))..)).)).))))).)))..)))...... (-57.8)