mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure AAGGTGTTCGACGGAATGCCT TGTTGTCTTTCAACGCCTTGC TAAACCTCTACGGACGAGCTGGTATGTTCGAGAATGCACAGAAGGTGTTCGACGGAATGCCTGAGAGAAACTGCAAGAGATCAGTGTTGTCTTTCAACGCCTTGCTGAATGCGTGTGTGAACTCCAAGAAGTTCGATTTGGTT GGAAAGACAAAACCTTTCACACACCAAACAAACGATGTCGTCTCTCTCTCGCCTTCTCCTCCGTGGCACCAACAGCTTCAGCGCCCCCACGAACGGCCGCTTTTTCTCCGCCGCTACCGCTGCTGCAGCCGCAACCTCGCAACGAACACCGTCCCTAATCACCCTCGTGAACGACGAACAAGATCCTAAATACATCACGGAGAAGTTCAAAAAGGCCTCCGAAACGGAGTGGTTCCGGAAGAACATTGCCGTCTATGAGAGAACCGTCCGCCGCCTCGCCGCCGCCAAGAAGTTCGAGTGGATCGAGGAGATCCTTGAGGAGCAGAACAAGTACCATAACATGTCCAAGGAAGGATTCGTGGCGAGGATTATAAACCTCTACGGACGAGCTGGTATGTTCGAGAATGCACAGAAGGTGTTCGACGGAATGCCTGAGAGAAACTGCAAGAGATCAGTGTTGTCTTTCAACGCCTTGCTGAATGCGTGTGTGAACTCCAAGAAGTTCGATTTGGTTGAAGGTATCTTCAAGGAGTTGCCAGGTAAACTCTCGATCCAACCAGATATTGCATCTTACAATACTCTGATCAAGGGATTGTGCGGAAAGGGTTCCTTGTCGGAAGCCATTGCGTTGGTTGATGAGATTGAGAACAAGGGTCTGAAACCTGATCATTTCACGTACAACTTGCTTTTACATGAGACGTATACAAAAGGCACTTTGAGCAGGAGAGAGATATGGGGTAGAATGGTGGAGAGACGTTCGAGGGACATACGTAGTACAATGCTCGGTGC 3 2 5' arm Raphanus_raphanistrum mirnest 100 100 -41.9 ..((((....(((((....(((...(((((...((((((((((((((((.((.(((..((((((................)))).))..))).)))))))))).)))..)))))...))))).)))....)))))....)))) (-41.9)