mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TGACAGAAGAAAGAGAGCACA TAGCTCTCTGGTTTAGTGTCCAT CTGGTGTGGGTTTGACAGAAGAAAGAGAGCACAGTTTGAGTCGCTGCCAATCCCCTTGTAGCTCTCTGGTTTAGTGTCCATAACCTCTGG GACCAGTTGTGATGGTGTGAAGAAGAGTCATAAGCCCTTGAGTTCTCACCTTCCATGTACTGCCTCCTATTCTGATGTTGATGGTCAGATAACTCGAACTCACCCATTGTCGTTCCACCGCCCATCTCTGTCTCGGTGAATCGCCCCAAATTCAAAACAGGAGACATATCATTCTGACAGTTATTGTCATCGTCCTTGAACACCCAAGGCGGGTTCAGATACTGATGCTGGCTAGGTGCAGGTGGTGGCTGAGCCATTGTAACCGTCATCGGACCAAAACCTGGAGAAGTTCTCCATGTGTTGTTGTCGTTGGTGTTGTCATGTGGCTGGTGTGGGTTTGACAGAAGAAAGAGAGCACAGTTTGAGTCGCTGCCAATCCCCTTGTAGCTCTCTGGTTTAGTGTCCATAACCTCTGGAGATGAGAAGCTTATCCCTCCTCCTCCTCCTCCACTGACTGATCCTTGACTAAACACGTTCATCGGATTGATCTGCCACGACGGTCGTCTCATCACTCTTGTATCCAACGTTCTTGTATTTGTCCAACCCATTTCTTGGGAACCAAGAAAGCTCCCATTCATTGTAGTTTCAGCATTTCCGTAAA 4 2 5' arm Raphanus_raphanistrum mirnest 100 far-MIR529 0.000001 -23.5 .......(((((.((((.(((..(((((((((((.(((.((....))))).....)))).)))))))..)))..))))...))))).... (-23.5)