mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TTGGGAGCTCGATGACATCAG CATGTTTCCGTTTTCAACA CTGGTCCTGAGTTGGGAGCTCGATGACATCAGAGGTACTAAGTGCAGCTCTCATGTTTCCGTTTTCAACAAGTTTGTA AGAATTCTAACCAACAGGTGTTTCTTTCTAAGTAAAGTTGAACTCGCAAGTTGTTATCAACAGCTCTTCCTTTCAACAAATCTACAGACAATATAAGTTTACAAGAGATTTTTAAGAGAAACTGTTTCTCTCTGAGAGGTGTATAAAAGAAAAATAATGTGCACAAAATAGCGGGCATCTCGTCATGATATCCCTTTGGACCTTCTGGATCCCGTATCAACACGGTTGAGATAGGAATGAGCCCATCAAGTGTCAGTTGTCCAGCCTTGGACCCTGTCTATACTTGCTTGGCTTTCTCATCAGGGCTTTCTTCATCTGCCCCAGGATTCAACGATGATATCTTCCCGAATGAATCTTTAGCATCCCCAAAAAAGTCTTTCACTTTGTCCAACACTGTTTTTAGCTGGTCCTGAGTTGGGAGCTCGATGACATCAGAGGTACTAAGTGCAGCTCTCATGTTTCCGTTTTCAACAAGTTTGTAGCCATAACGAAACTCAGTGGCAGTCCGCAAGACACGATGCTGCTTAATCGCAGTCTTTTGTATCTCCTTCTCATCTCTGTAAATAACAGCAGCAATGTTTCTAGCAATGGTGTCTTTGTAGATATACTTCCCCAAGAGGTTATCTTTAGCAGCAACCATGATCTTGGCCGTTGTACCACCGGCTATTATACTAAGCGGATACCAAAGATACACATTGGCCATACGGATGAAGATAACGAATCTAGGGTTTCCGTCGTCTTCAATCTTAGGCATAGGAGGAGGCGTGCGTTGATACTGTCGAGCCGCCATTCCTTTCTTCCCTTTCGCCTCCACTACGAACACCATCCGCCGTCGTTGTTTCTGTGTTCTCACCAGAGAGTGTCTCGCTAAACCGACCTCTTCGAGTCTTGCTG 4 2 5' arm Raphanus_raphanistrum mirnest 100 100 -17.7 ..........(((((((((.....(((((.((((((((...))))..)))).)))))...)))))))))......... (-17.7)