mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TCATCGTCATCATCATCGTCA ATGATGCATGATACGGTGAAA AAGTGATCCATGACTTAGCCTGCCATCCGGGTCATCGTCATCATCATCGTCATCACCACATTCTCGACGAAGTCGGGGGCTGGCGCATGGTCAATCTCATTGATGATGCATGATACGGTGAAAGTCTGATGATGGGCGGTGAAGTTATATG TTTTTTTTTTTTTTTTTGACCTAGTAAATTTTTTCCCAAACATAGAAAATTAAATATTTAAAATACGAATTTGACCATAGTCAACGACACATAATACGAAAATCACCAACATTAAAGAACTCTATCTAAGGAGGCTGCTAAACCACCTCAGAACATTCATAGAGGAAAAAAACAGAAAGGAAAAATCAAAAACATAGATAGCTAAGTTGCGAAAGTAAAGAAAAAAGCATATGCATTATTAAAATACAGAGCATGAAAACGTAATTGCTGGAACTCCACCCCAAGCAACACAGTCCTTCTTGACCACCTTGGAAGTTGTCGCATCCGTCTTATGCGCATCACCAACTGGCTTTTTTCCAGTACTCTTAGATGCCTCACAACCGCCACTGCCGGATGTAAGTGATCCATGACTTAGCCTGCCATCCGGGTCATCGTCATCATCATCGTCATCACCACATTCTCGACGAAGTCGGGGGCTGGCGCATGGTCAATCTCATTGATGATGCATGATACGGTGAAAGTCTGATGATGGGCGGTGAAGTTATATGAAGTGACTCTGACTTCGAAAGTGTACGCAAGTCTGCAATGAACGGAGGTATCTTAGAGTCCTCAGGGTTCACTCCTTCGGCCTTTTTGTCAGACGGAATTAACAGATGAGCTAGTGACCGTTATGTGATAACCATGTAATGAGTCAAACGCATATCTTACTAACAGCCGACCAGCTTCACTT 0 2 5' arm Raphanus_raphanistrum_subsp._landra mirnest mir-598 0.00003 ath-MIR414 0.0005 -46.2 .........(((((((.(((((.((((.((.(((((((.(((((((((((((..((((...(((((((...)))))))((....)).)))).........)))))))).))))))))))))...)).)))).)))))....)))))))... (-46.2)