mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TCCGCCGCCGTGTTCTGCCGA GGTGGGGCGCGGCGGCGCGTT CAATCTCCGGCGGGTGGGGCGCGGCGGCGCGTTCCTGTGACGCATGTCAATCAGTATCCGCCGCCGTGTTCTGCCGAGTTGACTCT TTTTTTTTCTCGTGAAAGAAGAAAGAACAAAAAAAATATTAGAGAGCGAAGTTAATGGGATTCGGCTTAGAGAACATCAAATCAATCTCCGGCGGGTGGGGCGCGGCGGCGCGTTCCTGTGACGCATGTCAATCAGTATCCGCCGCCGTGTTCTGCCGAGTTGACTCTGCGTTGATACCACTGCTTACGGCCGGGGGAACTGAGCGAGCGAGCATTGTCGTGGTGTAAACAACCATGAACGGTCAAGACGGAGACTGGAATTATCATCTGAGGATCCTAAGCAATAGCGCGCGTGATTCCACGGATCCTGCTTCTGATCCATCTGTGCTACAATCAGTTAATAAGCTACATGGGTTCTGTAAATTGGAGAAATCAGACGATCTGGTGGCGAGAATTTACCCTCAGATCAATAAGGTCTTCCAACGTTCTGTAGCTTCAGTGTCTCAGTCTGAGTCGTCAGGGACCTCCAAAGGCCTTCTCTTGCTAGCAATTCTTCAGTTTTTTCTTGATTTTGGAGATATGGTTCTGCACGATGCTGACCCGAGTTTGAGGACTTTCTTCCGTTCCTGTCTTAGCCGTGAGTTCTCGGATGCTGCGGTTGCTGAGGCAACTTGTGAGTTTCTTATCGAGAACAAGAGAAACTCTTGGCGTCTTTCCCTAACTTACTCCCTCAGTTTTTCCATTGTTGCTTAAGCTTATTGCCTGGAACTGGGAGAAGTTGGAAAAGTC 3 0 3' arm Raphanus_raphanistrum_subsp._maritimus mirnest 100 100 -38.9 .......((((.(((((((((((((((((.((..(((.(((....)))...))).)).)))))))))))))))))..))))..... (-38.9)