mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TCATCATCATCATCATCATCA ATTCTGGTGAGGATGAGATT CAGATTCTGGTGAGGATGAGATTTGGGAAGATTGTGGAAGGCTTGAAGTCCAAGATAAAGGCAAGTCTAAGGATGCGGAAGAGATCCTCATTATCATCATCGTCATCGTCGTCATCATCATCATCATCATCA GGGATCTCTAATATCTCCAAGTCACACCTCCAAGAGGTTCGATATCTCTCAACTCTCTCTTCTCTTATTATTACTTCTCTTTTGACTCTTGTTCCTCCAAATCCTTCTCTTTTACATGTATATTATCCTCTATCCTCCTCGTCTTTTTCTCGTTCAAAGGAGTGTAAAACCTTTGAATTGATGAAGTATGGTTTGTCCCAAAAAAAAGAAGGATCAATATAGTCTCTTAACTAGTTCATTTTTTTTCATCGTATTGATAAATCACAAAATGAAATAGTCACTAGTTTGTTTTAATATTCATCTCTATCAAGTGTAGATACGGTATCTTGAATTACCTTATTGAGTTAAAGTTTCGTCTCCAAGTGTGTATATATAATCAATACATAGATGGTACATAATCTTCAATTTAATTTTTCTACAGAAGTCAGATTCTGGTGAGGATGAGATTTGGGAAGATTGTGGAAGGCTTGAAGTCCAAGATAAAGGCAAGTCTAAGGATGCGGAAGAGATCCTCATTATCATCATCGTCATCGTCGTCATCATCATCATCATCATCATCATCATCATCGTATGAGAAGATAGAGAAGACTGACAGTATGAGATTTGAGTTAAGAAGCA 4 1 3' arm Raphanus_raphanistrum_subsp._maritimus mirnest mir-598 0.0000005 100 -31.3 ..(((..((((((.((((((((.(((((.(((.((((.(((((((................)))))))...((((.(((.....))).)))).)))).))).)).)))..))).))))).))))))..))). (-31.3)