mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CCTCTTCCTCTTCCTCTTGGG ATAGAGGAGGAGGAGGAGCAG ATCGATCAATCAATAGAGGAGGAGGAGGAGCAGCAGATCTGTGGCCGTCCGCCGTGCAGTAATTATGGGCGTTATTAAATTTGGAGTCTTCCTCTTCCTCTTCCTCTTGGGGCTGACCAC GGATAAATAAATAATAAAAAAAGAGAGGAGAGGGAATAAGGAGGAGTCGAATCGAAGGTCGATCGATCAATCAATAGAGGAGGAGGAGGAGCAGCAGATCTGTGGCCGTCCGCCGTGCAGTAATTATGGGCGTTATTAAATTTGGAGTCTTCCTCTTCCTCTTCCTCTTGGGGCTGACCACCTGTGATGCTTCTCTTCCCCAACCATCTGCTGATGATAACCAAGTTTGTGAGTTGTGTGATAAGTATCTCACCCTCGCCATTGATTACCTCCAAAATGACGA 4 0 3' arm Raphanus_raphanistrum_subsp._maritimus mirnest 7SK 0.0004 mtr-MIR2673a 0.000006 -36.1 .....(((.((...((((((((((((((((...(((((.((....((((((..((......))..))))))....)).)))))........))))))))))))))))...)).))).... (-36.1)