mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TCATCATCATCATCTTCTTCC AGGAGGAGGGAAGATTGTTTCA ATCTGTGAATATGGCCGTGCATCATCATCATCATCTTCTTCCAGGTGTAGTCAACGGGTTTAGTCCGGCTCCAGGTTTTATGTTTAATGTAGGCCAAGGTTTTGAGAAGAGTGAAGAGCATACCGGAGGAGGAGGGAAGATTGTTTCAGGTAGCCAAGGGAGGGAT GGACGCAGAGAAAAGAAAAGAATCACTCCCGGTGGTAATAATCTAAACTCAACCTCAATAATGTCGGCGTCTTTCTCCGTCGCATGACCCCATTGATGTCTAAGGGAAGCCTTAGTTGAATGATTGTCTTAGTGCTACGAATCACAGATCACTATGGACAAAGAGAGTGTAAATGGTATTGGATCACCTCAAAGATCCAACAGCGTTGACAGCTTAAAGGTTGAATCTCCGGGTGGTTCGACGAGAAAAGGTTTCGGTTTGAAGAAATGGAGAAGGATCAAGAGAGATACTCCTCCAGTGAAAGACGAAGCTGCTGCTGCTGCGCCTGTTGATGATGGTAGTAAGTTGCTGAAGCGTAATTTGACTGGTTTGGTGAACCCTCCGTCTAAACATGTGGACATGTCTTCGGTTGAAGCAAGACAGGGTAGCGAAGAATGCTCTGTTGGATCTGTGAATATGGCCGTGCATCATCATCATCATCTTCTTCCAGGTGTAGTCAACGGGTTTAGTCCGGCTCCAGGTTTTATGTTTAATGTAGGCCAAGGTTTTGAGAAGAGTGAAGAGCATACCGGAGGAGGAGGGAAGATTGTTTCAGGTAGCCAAGGGAGGGATCCCATCAAGAATGGAAGCGAAGAGCGCATAGATTCGGACGTGAGAAGTGATGATTTTGTGTTTTCTAGTGCCTCAGTTTCTGCTGCGAACCATATAGCAGAAAGTCAAGATAGGGAACAAGTCCAAACATATAGCA 5 1 5' arm Raphanus_raphanistrum_subsp._maritimus mirnest mir-598 0.0006 100 -34.4 ...........((((..(((...((.(((.((.(((((((((.(((((..(((.....(((((.((((((.....................))))..))..))))).....))).....))))))))))))))..)).))).)).....))))))).......... (-34.4)