mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CCTCTTCCTCTTCCTCTTCCT AGAGAGAGAGAGAGAGAGGGG GAACGACAAGAGAGAGAGAGAGAGAGAGAGGGGAGATTTTTATTCTAGTTCTTTTGGCGATACTGTAGATATTAGAGCCAACTGCCTCCAGACTAGTAAAGCGCGCAGGAGGAGATTCCGGAAAACTGGAAACAGGGACGGCTCTAGCCAAAGCGTACCCACTTCTTCTGGAAACAGGTGGCGTCGGTCGGCGACGGCTCCCTCTTCCTCTTCCTCTTCCTCCTTTTCTC TTTTTTTTTTTTTTTTTTGGAATAAAGAGATTTGTTTCACCTTTGAATGTTTCTGCTTAACAACTTTTTCTAAGTTTTATCAAAAACAGTGTGTATTGAACAACTCTCAAGAACGACAAGAGAGAGAGAGAGAGAGAGAGGGGAGATTTTTATTCTAGTTCTTTTGGCGATACTGTAGATATTAGAGCCAACTGCCTCCAGACTAGTAAAGCGCGCAGGAGGAGATTCCGGAAAACTGGAAACAGGGACGGCTCTAGCCAAAGCGTACCCACTTCTTCTGGAAACAGGTGGCGTCGGTCGGCGACGGCTCCCTCTTCCTCTTCCTCTTCCTCCTTTTCTCCCTGGACGACATTGACGCCAAATCTCGCTTTAGGATTGATTTTCTTTTTTCTTTTCCTCTTGTCTGTGTTCCGACAACGACAACAACTCGTTAGGTTCC 3 0 3' arm Raphanus_sativus mirnest 7SK 0.00001 mtr-MIR2673b 0.0002 -69.6 ....((.(((((.(((((.(((((.(((((((.((....))..(((((((((..(((.....))).))).))))))((((.(((..((((((..(((...((((...((.((((...(((.....(((....)))...)))))))..))...))))....)))...))))))..))).))))...(((((....)))))))))))).))))).))))).)).))).)).. (-69.6)