mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GTATAGCATCATGAGCAATCA ACTGCTCGTGATGTTATATCA GTACTTAATTTGTATAGCATCATGAGCAATCAGTCTTGGAAACTCAGTTGTTGGTTTCTCAATAGATTGACTGCTCGTGATGTTATATCATTTTCTCT TTTTTTTTTTTTTTTTTTGCACTGAACCATTAAAAACATTAACAAACAGTTTTCTGAAGGACAGAATATGCTTTGATCAGCTAATGGCACACACAACAACAAATGATGAAACGCCAAACGCAAATTATTAAACCAAGTACTTAATTTGTATAGCATCATGAGCAATCAGTCTTGGAAACTCAGTTGTTGGTTTCTCAATAGATTGACTGCTCGTGATGTTATATCATTTTCTCTAAGGTTGGAATTCCACGTGGTAGAGTTTCTTTGTCTCAGTGAAAACTGGCGGAGCCGAGTGTCGGAGCCCAATAGTCGGCGCCGTTGTCGCTGCCAACTTGGAGTGTGTAGGAGATTGGAACAAGACATAAACCCCGACTTCTTAAATCTTTCTTAGGTTCTTCATTTGCATTCTGAACCTCTGTAGATGATCTTCTCTTCACGCATTGATCATTCACAAGCTGACCAGGGTCCTCAGGAAATAAGCAACTTCTGTCTCCTCGCAAATGTTGGTTACTCAGATTCCCCGAGGCAGTTGTACCAAAATATGGATGACTCAGAGCCTCAATTTGACTGTGAAGGAATCTAATGTATCCAATAGCTTCCGACAGGACAGAAGCTGTGTCAGTCTTGCCAAAAGGAGATACTAGCTGATGAAGCACTGCGATCCGGCCTCCTAATTTCTCCTTTCTCACCTTAAGGGTGGACTGTGA 1 0 5' arm Raphanus_sativus mirnest 100 100 -36.8 ...........(((((((((((((((((.(((((((.(((((((........)))))))....))))))).))))))))))))))))).......... (-36.8)