mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TACTGAACCGGTCCGGTTTAG ATACTGTTCGTTCTATATT AAATTTCAAGTTTCCTCTGCTTATACTGTTCGTTCTATATTTTTCCCAGCTTCATCTACTTCAGTTTCACCATGACTTCTTCTCTTCTTTTCCGGTCAAGATCGGTCTACTCATCATATCCATCCTCCTCTACACCGAAGAAACAATCCAATTCATGACGAGGATACTGAACCGGTCCGGTTTAGGAGAGGATACGTACGCCCC GGATATTGTTCATTTCAATGGCAAATTTCAAGTTTCCTCTGCTTATACTGTTCGTTCTATATTTTTCCCAGCTTCATCTACTTCAGTTTCACCATGACTTCTTCTCTTCTTTTCCGGTCAAGATCGGTCTACTCATCATATCCATCCTCCTCTACACCGAAGAAACAATCCAATTCATGACGAGGATACTGAACCGGTCCGGTTTAGGAGAGGATACGTACGCCCCACGTTGCATGTTGACATCTCCACCAACACCATCAATGTTTGAGGCAAGACATGAAGCCGAATTAGTCATATTCGGAGCTCTTAACTCGCTATTCAAGAAAACCGGAGTTGAGCCGAGAGAAGTTGGAATCTTCGTTGTAAACTGCAGCGTGTTTAACCCTAACCCATCTCTCTCTTCCATGATCGTAAATCGGTACAAGCTCAAAACCGACGTGAAAACATACAATCTCTCCGGTATGGGATGCAGCGCCGGCGCAATCTCTGTAGATCTCGCCACGCATCTTCTTAAAGCAAACCCTAATACCTATGCAGTCATTGTTAGCACAGAGAACATGACTCTTAGCATGTATCGAGGCAACGACCGGTCCATGTTAGTCCCTAACTGTCTATTTCGAGTAGGAGGTGCCGCGGTTTTGCTCTCAAACCGAAGCCAAGACAGAGTTCGGTCTAAGTATGAGTTGACTCAACTCGTTAGGACCCACAAAGGAGCTAGCGACAAACATTACACTTGTGCTGACC 4 2 3' arm Raphanus_sativus mirnest 100 100 -31.7 .........((.((((((.((((.((((.((((((..(((((((..((...............(((((....(((((................)))))...(((((.((.....................)).))))).)))))...........))..)))))))..))).)))..)))).)))))))))).))......... (-31.7)