mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TCTGTTTGGTTGCTGAGAAAG TTCTCGGTGACCAGATTCTGATT TTCTTTTCATTTCTGTTTGGTTGCTGAGAAAGCGAGGGAAATTCTCTGAAATTTTCTGTTTTCTTTTTCTTTCTCGGTGACCAGATTCTGATTTTTTAC GGGAGAAGACAAATACTCAAAAGAACCAAAAAGCCTTCTTCTTTGATCAGTCATCATCACCAGGGCCCCTTGTGTTCCGTGCCGCCGCTGATGAGTTCAACTCTGCATACTCCTCCTTAGAAGACAGATACCCTAACTCTCTCTGGGGTTCATCAGGGCAGGAACTGATGAACAACCCTGTGCCTTATCAGGTGGTGGGCTCTGGTGGCAACTCTGGTGGGTATATGTTTCCTTCTCCCTCCGGACTCTGCGTTGATACCACTGCTTACGGCCGAGGGGAGATTATAAAAAAATACTAATATGTTGATTACGAAACTAGAAACCGTTATTCTATTTAAATCTTGAGCAGAGTCTTCTCTGTTTCGTCGTTGTTTATTTCTCTCTCTACTTAGCTTTGTGTATATAATTTTTCTCTTCCCTATATCATCGTTGTTTTGTAAAGATAAAGATCAGTGAGTCATCTTTCTCCTTCTTCTCTCAAGAACAGGTAAACTAAATCTCTCTCCTCCGCTCCTTCTTTTTCTCCTCTCTTCTCTGTCTTTTCTCTTTTTTCTTTTTAATTAACTTTCTATCTCTTTTTTTTCTTTTCATTTCTGTTTGGTTGCTGAGAAAGCGAGGGAAATTCTCTGAAATTTTCTGTTTTCTTTTTCTTTCTCGGTGACCAGATTCTGATTTTTTACAAATTACATC 1 2 5' arm Raphanus_sativus mirnest 100 100 -31.6 ...........((.((((((((((((((((((.((((((((......(((...)))...)))))))).))))))))))))))))))...))........ (-31.6)