mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TCCATCTTCTTCTTCTTCGTC AGAAGAAGAAGAAGAAGAAG TTAAGAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGATAAATCGATTCTTTATCTGGAAATTCAATGGCGGTTTCTTCTGTAACTTCGTTCATATTACCCTCTTTCGCCAACCTTACATCTTCTTCTTCTTCCACCAAACAGAAAGTCTCTTTGCTTCCATCTTCTTCTTCTTCGTCTACTCATGG GGGTTGGATAACGGATAACCCTCGAAACGACGAAGCTGCGGAATAGAAAACCACATCCTTGTGAAGCGTTTAAGAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGATAAATCGATTCTTTATCTGGAAATTCAATGGCGGTTTCTTCTGTAACTTCGTTCATATTACCCTCTTTCGCCAACCTTACATCTTCTTCTTCTTCCACCAAACAGAAAGTCTCTTTGCTTCCATCTTCTTCTTCTTCGTCTACTCATGGCGGCACTGGCTCCTGCGTCCTTAACAAACCCTCCATCTCGTTTACGAAGAAGGTCTTCGCAGCTCCCGAGACCCTTACTCCGGAAACCCTCGATGAACCCGCCTCTGATGACTTCTCCGAGGTTCCGAGCTCTTCCTCAATAAGTGTTGACGCAGATAAGATGGCGCCAAAGCAAAAGATTAGGATAAAGCTTAGGTCATACTGGGTGCCTCTCATTGAGGACTCATGCAAGCAGATACTAGACGCTGCGAGGAACACCAATGCCAAGACGATGGGTCCTGTTCTCTTGCCAACCAAGAAGCGTATCTACTGTGTTCTCAAGTCTCCCCACGTCCACAAGGATGCAAGGTTCCATTTTGAGATCAGGACTCACCAGCGGATGATTGATATTCTCTACCCCACTGCTCAACCATCGACTCCTTGATGCAGCTGGATCTTCCTGCTGGTGTTGATGTGGAAGTGAAGCTCTGAACTACAATGAGC 2 1 3' arm Raphanus_sativus mirnest 100 100 -58.6 ....(((..(((.((((((((((((((.((((..((((((((((((((..(((.(((((((.......))))))).((...))..((((((........((((...........))))......))))))..)))...))))))))))))))...((((.(((...))).))))))))..)))))))))))))).))).))).... (-58.6)