mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TCATCGTCATCATCATCATTT ATGATGGTACATGAACAATGGCA AAAAACAAAAAAATGATGGTACATGAACAATGGCAACATCCTAATCACTTTACAGACATTACCCTACCTCTCCTTGTTGTTTGGTTAAAGACACAATCATCGTCATCATCATCATTTTGTGTGTTTCTCTCTTCCA AAAAACAAAAAAATGATGGTACATGAACAATGGCAACATCCTAATCACTTTACAGACATTACCCTACCTCTCCTTGTTGTTTGGTTAAAGACACAATCATCGTCATCATCATCATTTTGTGTGTTTCTCTCTTCCAAACACCCTCAAGATTAAAAAAAAAAACATCCATGGAACACACACGACAAACAAACTCACCACCACTTGCTAGCTTTCATAAGTTGTGCGCTCTTTTCAAAACAGAGCTTCTTGCATACCCTCTGTTTCTGTCTGCACCTGCCCATATCCGTGTCCCTCAGGCTGGGGGGCGTAAGGGTTGGAGTTGTTGAAGGGAGGGAAAGCTGTGAACTGTGGAGGAAGTGAAGGATCCATGGAT 3 2 3' arm Raphanus_sativus mirnest 100 ath-MIR414 0.0004 -19.6 ..(((((..(((((((((((..((((...((((.....((.((((((....((((.....................)))).))))))..)).....))))..)))).)))))))))))...))))).......... (-19.6)