mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CCATCATCATCATCATCATGG ATGGTGGGCATGGTGGCTGGTG CATGATCATCACCATCATCATCATCATCATGGCCATCACCATCACGGTGGACATCATGGTGGGCATGGTGGCTGGTGAGGATTAT GAAGAAGAAGAGAGAGCTGCACGTAGCTGGCTTGGAGCTTACTCTTGACAGTAAGCATCAGAGGAAGGGGAAGCGAGATGTTTGGACCGCCGCCTCCACCTGGAGATCCGCTGCTCAACTGCATATGCTGCCCCTGCATACTCTTTTCTTCCCTCATAGGATGCCTTCTATCCTGCATTTGCGCCCCTTTTACCTATTTCTGGGGTGGACCTGGCTTTGGCTACCATCACCATGATCATCACCATCATCATCATCATCATGGCCATCACCATCACGGTGGACATCATGGTGGGCATGGTGGCTGGTGAGGATTATACATACCGACCCATCTACCATCATTGGTGACAGTACCCACAGCATCATCTCGACTTTGTATTAGCCATCATCATCATCATCACCATGGACATAACCATCACCGGTATCACCACAGTCATGATCATGATGGAGACCTTGCCAAACATGGTTCCTTATGAATCAACACAGGTTTTTTCAGCGCGACTTTACTATATTCACATCAATCTTTTGTCGGTTGTAGTACAATTCTTCCAGTAGAGCAAAAATTTATAACGAGCACTATAATTTGGGAAAGCTACATTTGGTCTTATTTGCCTAGTGTGTTTTTATTTTCTGTGACATGGAACTGCATCTCTTGCCAGATAAATGGCATCATGA 2 1 5' arm Adiantum_capillus-veneris mirnest 100 100 -35.2 .((((((.(((((((((((((..(((((((((...(((((.....)))))...)))))))))..))))))).)))))).)))))) (-35.2)