mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TGGAGGCAGCGGTTCATCGAT CGATAAACCTCTGCATCCAGC GTGACAGTTGCTGGAGGCAGCGGTTCATCGATCTCTTCCTGAGAATTTTTTTTTTGGAAAGAAAGGAAGATAAAAATTAAAAGCATGAACAGATCGATAAACCTCTGCATCCAGCGGTTTACC GGAAATGAAAAGAAAAAGAAAAAAAAAAACAAATCAGAGAAGGGGTATCTAATCAATCAGAATCTGGATGACTCGTTCAAACATTATCACTCTCTTTCCTTCCTTTTTTTATGTTTGACTGTCTGTGACCGTGTGTGGATGCATAGGGATTTATGAATCTTCTCGAAATCTCAGATTCCTCTTTGTCCCTCCAGATTCAAGTGTGTTTTTCACATATTTGTGGTTCACTATTATTATTTTCTCTTATCCATTTGCGTCTGTCGTGCAATGAAAATCAATCAGCTACTGTTATTTCTGGTAATATACCATTGGGTTCTTTTTTCAGATCTGAGATTTCGTTGTTTATCTAAATCGGGAATTTTTTTTCTTTTTTCTCTTCCATTTCATTTCGGTTAGGTAGATAAAAAAGCAAGAGTGACAGTTGCTGGAGGCAGCGGTTCATCGATCTCTTCCTGAGAATTTTTTTTTTGGAAAGAAAGGAAGATAAAAATTAAAAGCATGAACAGATCGATAAACCTCTGCATCCAGCGGTTTACCTCTTCGTCAATCATCACTTTTGAATCCGTTTTTGACTTTCAAAGATTACGCAATTATTTTATTTATAGTTTGTTCCTCTGGTAGACCTAACAAACTGAATCAATAATCTCCTTGATCTGTTTTCTTCTGTTTTAACAGTGAGGGAAAATTT 3 0 5' arm Raphanus_sativus mirnest MIR162_2 0.00000000000003 ghr-MIR162a 0.0000000000004 -42 ((((...((((((((.((((.((((.((((((((.(((.((..(((((((.((((...........)))).))))))).....)).))).)))))))).)))).)))).)))))))).)))). (-42)