mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CTTCTTCCTCTTCCTCTTCGC GAGAGAGAGAGAGAGAGAAGAG CCCGAAGAAAACGAGAGAGAGAGAGAGAGAAGAGAGAGAGAGAGTCCGCTTCAACTAGGTAGGCTGAACCACTTTATGTGCTCAAAGTCTGACCTCAGCCCGCCACTCGAATCTAGCGATGGGAGACGAGAAGCCGACGGTGGTGATGGCCAATCGAGAAAGAGATCTGGAGCTTCTGATGCCCGTCGCTGATAAAAGACGAAGGTTCTACTTCGAAGCCGTCTTCATCTTCTTCCTCTTCCTCTTCGCATCACCAGG GGAAAACCAAACCAAAAAATTATAGAAGAGCGAGCTCAGAACCGAAGGCCCCGACCCAATCCTGAACAAGGACCCGAAGAAAACGAGAGAGAGAGAGAGAGAAGAGAGAGAGAGAGTCCGCTTCAACTAGGTAGGCTGAACCACTTTATGTGCTCAAAGTCTGACCTCAGCCCGCCACTCGAATCTAGCGATGGGAGACGAGAAGCCGACGGTGGTGATGGCCAATCGAGAAAGAGATCTGGAGCTTCTGATGCCCGTCGCTGATAAAAGACGAAGGTTCTACTTCGAAGCCGTCTTCATCTTCTTCCTCTTCCTCTTCGCATCACCAGGCTACCCACGGGACTTTGAGCTTG 3 1 3' arm Brassica_napus mirnest 100 100 -66.5 ......((...(((.((((.(((((.(((((((..((((........(((((.....(((.((((((..(((.....))).(((.....)))..)))))).)))..((..(((.(((((((((.....((((((...(((((((....))))(((........))))))..))))))....))))))))))))....)).((((......)))))))))..))))..))))))).))))).)))))))..))...... (-66.5)