mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TTTTCTTCTTCTTCTTCCATT TGTAGTCAGGAGGAGAAAGTG TTCGATTAAAGATGTAGTCAGGAGGAGAAAGTGGGACTGAAAAATCATATTCACAATCCTCAAGATCTTCATATCCCCAAAACTCTTCTTTATTTTCTTCTTCTTCTTCCATTTTCCATTTT TTTTTTTTTTTTTTTGGTTTATAACTTTAAATATTATTAACTGTCGACATCCAAAACTAAATAGAACACCTCATCGAATACTACAAGTGTTTAATTTACGAAATAGACAACTCTAAGCAAAAAAAAAAAATTGATATTTCAAGTTTTTACAACTAATTTTAGATGATCTAAGCTACTATGATATGAAGAGCTTCGATTAAAGATGTAGTCAGGAGGAGAAAGTGGGACTGAAAAATCATATTCACAATCCTCAAGATCTTCATATCCCCAAAACTCTTCTTTATTTTCTTCTTCTTCTTCCATTTTCCATTTTTCTTTCTCTATTTCTTCTCCTTCCAGTATTTCTAATACCTCGATCATGGAAGGCCGACATGGAGACGATGATCTGATACAGAGAGACGCAGCAAAAGCGATACGGTGAAGCTGTTTGATATCAAAGTCCTCCTCTATCCTTGGATCCACCAACTTCTCAATCTCGCCCTCTTTTATTATGGTTTTTGCCCAGCTATGTAGGATTTGGTGGGAAGCATCAACAGGTTTTTTACCAGAAATGAGTTCAAGTAAGAACACTCCAAAGGCAAAAACGTCAGTTTTCTCATCCACAATCCCATGTGTGTAGTACTCTGGTGCCAAGTGCCCAAAAGTGCCTTCAATTGGAGCAATGGAATGGTGAGACCACTGAGAAGGCAACCATTTTGCCAAACCAAAATCAGATATCTGTGGCTGAAATATTGGGTTAGGAGAACATTGG 2 2 3' arm Raphanus_sativus_var._oleiformis mirnest 100 100 -18.3 ........((((((.((..(((((((((((((((((.((((..(((.................))).))))..))))..............))))))))))))).))..))))))....... (-18.3)