mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GCGTATGAGGAGCCAAGCATA TGCCTGGCTCCCTGTATGCCA ATGTATTATATATGTATATGCCTGGCTCCCTGTATGCCATACACTAAGTTCATCGACCATCGGCGACCTCGGTGGATGGCGTATGAGGAGCCAAGCATATTCTCAGCATAGACA GGTGTCTGCATAATACATATATACATCTGAATCTCTCCCATCCCACCCTTAATTTTTTATATAAACCATTTCTCCTCCTCTCTCAATCACCTTCAATATCTCCCTTTCTCCTCTCTCTCTGGATCATCAATCTCGACCTTCTTATTTTGTTTATTGATTCTCATCTTCTCTTTTGTATTTTCAAGAAATCGGCATTTAGGGTTTCAAGAACAGTTAACCTCAATTCCTCCTGAGGAGAGAGAGAAAACAAAAGATATCATCAATTTCATTTTCTTACATGCAAATCATAATCCATGCTTTAGATTGTTTCTATAGTCATACATATGTGCTGTTATATCTGTTCATGCATGTCCAGGTGGAGATCTAGCTAGATATAGCTTTACTTAAAAACATAATTAGACATCCATTTAGGGCAATTAGTTTCAATACATAATAACATGTATATGCATCATGACATATATGCATATATGTTGATGTATTATATATGTATATGCCTGGCTCCCTGTATGCCATACACTAAGTTCATCGACCATCGGCGACCTCGGTGGATGGCGTATGAGGAGCCAAGCATATTCTCAGCATAGACATATTTTCTAATTATGTTATAGTACTAATTAAATTGTATTGAACTTGTTTTTTAGGAATCTATTTTAATTGCTCCATCCAATCATGTGAAGAA 2 0 3' arm Raphanus_sativus_var._oleiformis mirnest mir-160 7.0E-15 bra-MIR160a 4.0E-22 -46.2 .(((....(((.((.((((((.(((((((.((((((((((.((((.((.((.((((...)))).)).)).)))).)))))))))).))))))).))))))...))..))).))) (-46.2)