mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TAGCACCATATGAAATCAGTTAT GCTGATTTCAGTTGGTGCTAGA TCCTGGGAATTCTGTGCACGGAAGCTGATTTCAGTTGGTGCTAGATAGAAGTCGGCGTTCTAGCACCATATGAAATCAGTTATCGGTGCATAGGC 3 0 3' arm Branchiostoma_floridae mirbase mir-29 0.0003 tca-mir-29 0.000001 -47.12 ..........(((((((((.(((((((((((((..((((((((((.............))))))))))..))))))))))).)).))))))))). (-47.12)