mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TCTCGCTGGCGCGCGCGTGCG CGCGCGGTCCCATCGAAGG GCATGGGGGCCTCTCGCTGGCGCGCGCGTGCGGTACAGGTGCGCGCGGTCCCATCGAAGGCTCCCGGG CCTCCGTGTTTTTCGCGAGCGGCTACCGGGAGCTCGTGTGCAGCGGCGCAGGGAAGAAACGGCGCTGGCATGGGGGCCTCTCGCTGGCGCGCGCGTGCGGTACAGGTGCGCGCGGTCCCATCGAAGGCTCCCGGGCGGTGCCCAGGAGGACGGCGCACGGAACCATCACCGCGGCGGCGGCGGCCTCCTCACGCGGCGATGTTGTGCTCACGGGGTTTTAACGGCAGCCTGCACGGTGGACTTCGGGGGCCGCGCACGGAGTGGCTCCAGACGCGGCGGCGGTTGCTCGTGCGAGGCTAGCGACGGCGCGTTTGGAGGCCGTTGCAGATGGCGGCGGCGCGTCTGCAGGAGGGTCGCCGGGTCGTTGCGCCTCCCAGCGGGGTGCCGGGTTGAACACCTGCAGCTCCGGCAGGCCGCGTGGGCTCGGTGGTCCTGGTCGCGCGGACAGAGACAGACTGATGCCCGAAAGAGAAGATGAAAAACGGACAAAACACAGAGAGACAATTAGTTTAGCCGGTGATAGAGGTATACGAAACGGATATGGATAGGCCAGACAAATTAAATNCAGACGAAAAAAGGCTGAAATNTGCCTCTACGGAAGTATGCCCGTATTGACCTGAGCTCC 2 2 5' arm Saccharum_officinarum mirnest 100 100 -36.1 ...(((((((((.(((.(((.((.((((((((.......)))))))))).))).)))))))))))).. (-36.1)