mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CATCTTTAGCCCCGATTGGAA CCACTTGGGACTAGAGATCTT AAACGCCGGGAGCCTTTAGTCCCGGTGGAGCCACGACCGGNGACTAAAGGACATCTTTAGCCCCGATTGGAACCACCACTTGGGACTAGAGATCTTTAATCCCAGGCTCTTTATATTTGTCTTGTGATGTGC TNGCCTAGTCGACCCACGCGTCCGCACGACGGTGCCCGTCGAGCTGCCGGCCAGGAGCCGGTTCCTGCTGATGAAGAACAGGAGGCTTAGGGGCGAGTACACACATCACACACAGAACATTGCACACACACATTCCACACTCGCGCACCCACACACGTACAGATGTAGAGAACTCACACCGACGGCTAGGGGCGGTGCAGTACGACCGGTGAAGGGGACGGTGGGGCGAGGCCAGCCGGGGGCACGCGCTGGACGAGGACGATGATGACGGGGCCGGTGAGTATGAGTACCATAGGCTGGTGGCGCATTACGAACGACAAGGGCGGTGCACGCGCGAACAGGTCAGGCCAACTACGGAGATCTTGTCGGACGGCGGACTTGGAGACAGGCAGCTAGCCGTGCTGGGTGCCGCACGCGGATGGAGGCGCAGAGTAGGTTGGTGTGGGAGACATTGAAGAGGCGTGGCGTGATGGCTCGAGCAGAGAAAGTAGATCGAGTGATGGATGGGAGGAAGAAGACGATATGATATATAAACGCCGGGAGCCTTTAGTCCCGGTGGAGCCACGACCGGNGACTAAAGGACATCTTTAGCCCCGATTGGAACCACCACTTGGGACTAGAGATCTTTAATCCCAGGCTCTTTATATTTGTCTTGTGATGTGC 5 0 5' arm Saccharum_officinarum mirnest 100 100 -44.9 ....(((((((.((((((((((((((.........))))).)))))))))..((((((((.(((((.(((.....))).))))).))))))))......)))).)))....((((((........)))))). (-44.9)