mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TGGCAGAGATGGCACGTTGAT CACGTTCCAAGCGTCTGTCTTAACAAGCGTTCTGTTCC CTTACCTGGCAGAGATGGCACGTTGATCATGAAGGAAGGATGCTCACGTTCCAAGCGTCTGTCTTAACAAGCGTTCTGTTCC 5 20 5' arm Branchiostoma_floridae mirbase U1 0.00000007 100 -18.4 .......((((((..(((.((((.((.(((.........))).)))))).))).(((..(((....)))..))))))))).. (-18.40)