mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure ATTTGGAGCGGAGTGAGTACT TACCCCCTCTCTTCCAAATTA AAAATAAAATAGTACCCCCTCTCTTCCAAATTATAAGTCGTTCTGCATATATACATTGTCTAGATACATACTAAAGAGCTACTCCTATGTATCTCTAAAGAGAGCCCGAACAACTTATAATTTGGAGCGGAGTGAGTACTGAATTAATG TTTTTGATAGCGTAACACTAAAAATAAAATAGTACCCCCTCTCTTCCAAATTATAAGTCGTTCTGCATATATACATTGTCTAGATACATACTAAAGAGCTACTCCTATGTATCTCTAAAGAGAGCCCGAACAACTTATAATTTGGAGCGGAGTGAGTACTGAATTAATGGTCTCATTACTGCATGACTGTCCTGTCAAAAGTACTGCTACTGTAACCAATTAACCACGGAATTCTCAAGGTGTACAAAAGCTTTAGCAATAGTAAATGTATAACTGAACAAACCATCCGCATCGTCCTACAGCATGGACGTACTCATCGGATTAGCGAAGTACTGCCTTCCAGACTTGGAGGGGTTTTTGTAGTGACCTTGCCGCAGAAGACTCTGCAGCATGATGGGAGCAGCTGGCACTGGTTCATCGGACACCCGGACATAGAGGTGTTTATCAACTGTCAGCTTTCCCAGCAAGGTCCTGCATGTCTGAGGATTCAGTACATCCATACGATGGATAACGTCCTCCTCCGAAATTCCTGGATACTGCATGGCATATCCAATAATTCGACGACTTAAACCTTCATAGACAGTGCCATTCATGCTGCCATCACCATTTATCCATGGTAATATTGGATGATAAATATGACTTTTGCAAACATGGCAGCAACCATTGCCCAAGTGCCAAGTAGATGCATCATCTGCAGGACTTTG 4 0 3' arm Saccharum_officinarum mirnest MIR1122 0.0005 100 -36.8 .........((((((...((((.(((((((((((((((.((((.((.((.((.....)).))((((((((.....(((...))).))))))))(((....)))))..)))).))))))))))))))).))))...))))))........ (-36.8)