mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure GGCGTCGGCGCTGCACGCGGC CGTGAGCCGGCGCCCGATGCCCG ATCATCTGGGTGGCGTCGGCGCTGCACGCGGCCGTCAACTTCGGGCAGTACCCGTACGCCGGGTACCTGCCGAACCCGCCGCGACCGTGAGCCGGCGCCCGATGCCCGAGCCCGGC CAGACGCTCATCAACGGCGGCGGCATCTTCGAGTTCACCGTGTTCCCGGGCAAGTACGCGCTCGAGATGTGCTCCGCCGTCTACAACAACTGGAACCTCACCGAGCAGGCCCTCCCCAACGATCTCATCAAGAGAGGCGTCGCCGTGGTGGACGCGAGGAACCCGTACGGCGTCCGGCTGCTGATCAAGGACTACCCGTACGCCATGGACGGGCTGATGGTATGGTGGACGATCGAGCAGTGGGTGAAGGAGTACCTGGGCATCTACTACCCCTACGACATCGACGTCCGGCGCGACGCCGAGCTGCAGGCGTGGTGGAAAGAGGTCCGCGAGGTCGGGCACGGCGACCTCATGGACCGGGACTGGTGGCCCAAGATGAACACCGTCAAGGAGCTGGCCAGGACGTGCACCACCATCATCTGGGTGGCGTCGGCGCTGCACGCGGCCGTCAACTTCGGGCAGTACCCGTACGCCGGGTACCTGCCGAACCCGCCGCGACCGTGAGCCGGCGCCCGATGCCCGAGCCCGGCAGCGACGACTACAGGAAGCTGGAGGCGGNGCAGAAGGAGGCGGACACCGTGTTCATCCGAACCATCACCAGCCAGCTTCAGAACATCGGGGGCGTCTCGCTCATCGAGATCATGTCCAAGCACTCNTCCGACGAGTGTACCNTCGCCAGCGCGACAAGCCCGAGCGCTGGACGTCGGACGCCAAGCACTGGACGCGTTCAAAGGTTCGCAGCCGGCTGGTGAGATCGAGAACCGATCGAGAGATGAACGGNACCCGGCGCTTAAGACCCGACCCGGCCGGGGAGGTTCCCTACTGCTTGTGGACCCAACACGTTGGACGTAACCGGAAGAAGGCAAGGGGCTTACTGGCTTGGCTATCCAACAGCTTTTCATTTGAAAAAAATTTGTTTTGCCCGCCGAAAAAAAAACAACCTCTCGTTGGGGACTTGCCTCCTCTTTTCCGCGGAAGGGACAAGGTCTTAACTTTATATTCAAAAAAAATTTTTTTGTTTTTTGCCCCNTCCNNTCCTCNNNCTCNACACNNCATATTTTCATTATTAACTCTATTAAAA 2 2 5' arm Saccharum_officinarum mirnest 100 100 -53.7 .....((((((((((((((((((((.(((((.(((....(((((.(((((((((.....)))))).))))))))......))).))))).).))))).))))))))...)))))). (-53.7)