mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TGGAATGTAAAGAAGTATGCGT ACCTACTTCTTTACATCTTCATA ACCTACTTCTTTACATCTTCATAGACTAAGAATACCGTGGCTGACATTTCAATTGCAGTTCCGGCAACTTATATGGAATGTAAAGAAGTATGCGT 5 1 3' arm Ciona_intestinalis mirbase mir-1 0.0003 cin-mir-1 5e-49 -31.7 ...(((((((((((((.((((((...((((....(((..((((.((.......))))))..)))...)))))))))))))))))))))))..... (-31.70)