mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TATTGCACTCGTCCCGGTCTAT AGGCCTGGCGAAGTGCATTGCG TCCCAAACTTATAAACTGTACCTGCATACTTAGGCCTGGCGAAGTGCATTGCGTTGTCATGGTCGTATTGCACTCGTCCCGGTCTATGTATCTGGTAAAAA 3 2 3' arm Ciona_intestinalis mirbase ciona-mir-92 2e-39 csa-mir-92a 0.0003 -34.8 ..................((((.(.((((.((((((.(((((.(((((.((((..........)))).)))))))).)).)))))).))))).)))).... (-34.80)