mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TAATCTCAGCTGGCAATCTGTGA ACGGGGCAAGATGGGATTTTG TTACTCGAGCCTGCTTAATCTCAGCTGGCAATCTGTGATGTCATAATCATCACGGGGCAAGATGGGATTTTGCTGACTAAGGGTTTAACGACTCAGCGTATTAT 4 2 5' arm Ciona_intestinalis mirbase mir-216 0.00002 csa-mir-216a 0.000001 -30.1 ........((..((..(((((((.((.((...((((((((.......)))))))).)).)).)))))))..)).......(((((....))))).))....... (-30.10)