mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TCACAGTGGTTATATACTGC AGTATATCCATCGTGC TCACAGTGGTTATATACTGCCTGTGGTATTTACGAACATGCAGTATATCCATCGTGC 2 2 5' arm Ciona_intestinalis mirbase 100 cin-mir-3598 1e-26 -20.5 .(((.((((..(((((((((.(((.((....))..))).))))))))))))).))). (-20.50)