mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TCCATCTTCTTCGTCTTCTGG ACAGCACGAGCGACATGGTCA ATCCGGCACGCGCGGAAGCCCCACAGCACGAGCGACATGGTCACGCTCTCCATCTTCTTCGTCTTCTGGGTCAGCATCAGCGCCTGCG CAACCGGTTCAGCTTCAGCATCTCGGGTGTACGCTGTACAGCCATGGATTGCTTCGTCCGCTTGTTCGGGCTAGCCATCGCCAACGCGGTGTGCATCGGCGGCACGGGCCTCCTGATCAACTCGCTCATCCGGCACGCGCGGAAGCCCCACAGCACGAGCGACATGGTCACGCTCTCCATCTTCTTCGTCTTCTGGGTCAGCATCAGCGCCTGCGTCTACCCTGCCATCTGCGGCGCGCTCTTCCCGTGGTCCGCGCTGGGGCGGTTCCTGCGCTCGCCTCTGCGCGGCCTCGCCTGGCTGCTCTGCCTGCCGTGCCGGTGCGCGCGCACGGCGCGAGCCCGGCTGCGGCACCGGAGCAGCGGCGGCGCTTCTGCCGCCTCTGGTCTTTTGCACGGTTCGTGGTGCAAGGACGACAAGAAGGCCATGCTGCCATCTACGTGCTCGCGCGGGAACCCCCCGTGCGGGGTGGGGCGCGGTTGTCNCCN 5 0 3' arm Saccharum_officinarum mirnest 100 100 -29.5 .....(((.((((.((.((((((.((.(((((.((.((((.........)))).)).))))).)).))))...)).)).)))).))). (-29.5)