mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CCTGTTGCTGGGAATTCCCA GGAACTTTCCAAGGAACAGGCT CGGAACTTTCCAAGGAACAGGCTTAATGCATATAGTCGGCCTGTTGCTGGGAATTCCCA 3 2 3' arm Ciona_intestinalis mirbase 100 cin-mir-4001c 8e-28 -23.2 .((((.((((((.(.((((((((....((.....)).)))))))).))))))))))).. (-23.20)