mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure TAAGTTGTGTAAATTCAAAC TTGTTTTTTTACATCCAAGT GTTTGTTTGTTTTTTTACATCCAAGTTACAAATTACTAAGTTGTGTAAATTCAAAC 6 0 3' arm Ciona_intestinalis mirbase 100 100 0 ....(((((..(((.((((.(..(((........)))..).)))).)))..))))) ( -8.10)