mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure AACCGGGACTAAAGATCACTT GTGACCTTTAGTCCCGGTTGG ACTAGGACTAAAGTGACCTTTAGTCCCGGTTGGGGGAACAAACCGGGACTAAAGATCACTTTTGGCATGA TAGCGTGGTCGCGGCCGAGGATTGAAGCGGCTGGCTAGAGATCGATGAGGCGGGCCAGGGATGAGGCGTGCACGGCTGGATCTGGCGGGGATGAAGGTGGAGAGCGACCGCATGTGCACGGTGGGGGCTGGGGGGCCACGGCGTGACGAGACGAGGCTAGCAGGGACGAAGGGTGGTGAGAGGCGCTCTCGTCGGCAGGCAAAAAGAAACAGATCAAGGAAGAAGAGATGGCACCCCTGTATATATAGGACGGACACCTTTAGTCCCAGGTCCAGCCACGAACTAGGACTAAAGTGACCTTTAGTCCCGGTTGGGGGAACAAACCGGGACTAAAGATCACTTTTGGCATGAGGCTATTAATTTTGATGTTTTATCAAAATAGAAAACTCCAAGAGCTTACATAGAAAAGATTGATTTCTTTAGGCTTTACCATATGTCACTTCACAACAACTTAGTTCACATGTTTCCCTAAAAAAGATATGTCCAC 1 0 3' arm Saccharum_officinarum mirnest 100 tae-MIR1117 0.0002 -30.2 .........(((((((.((((((((((((((.........)))))))))))))).)))))))........ (-30.2)