mature_miRNA miRNA* pre-miRNA EST_contig mismatches bulges arm species source_database RFAM_best_hit RFAM_lowest_evalue miRBase_best_hit miRBase_lowest_evalue folding_energy secondary_structure CATTTTGATGGCTACCTCCC GAGTTTCCCATCAAAATACT GGGAGTTTCCCATCAAAATACTTTTTATAATTTTAGCATTTTGATGGCTACCTCCC 4 0 3' arm Ciona_intestinalis mirbase 100 100 -18.9 (((((.(..((((((((((.((............)).))))))))))..).))))) (-18.90)